Computational Biology

Speeding Up the DIALIGN Multiple Alignment Program by Using the ‘Greedy Alignment of BIOlogical Sequences LIBrary’ (GABIOS-LIB).- GeMCore, a Knowledge Base Dedicated to Mapping Mammalian Genomes.- Optimal Agreement Supertrees.- Segmentation by Maximal Predictive Partitioning According to Composition Biases.- Can We Have Confidence in a Tree Representation?.- Bayesian Approach to DNA Segmentation into Regions with Different Average Nucleotide Composition.- Exact and Asymptotic Distribution of the Local Score of One i.i.d. Random Sequence.- Phylogenetic Reconstruction Algorithms Based on Weighted 4-Trees.- Computational Complexity of Word Counting.- Eugène: An Eukaryotic Gene Finder That Combines Several Sources of Evidence.- Tree Reconstruction via a Closure Operation on Partial Splits.- InterDB, a Prediction-Oriented Protein Interaction Database for C. elegans.- Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data.